All functions

arma_acf()

Calculate the autocorrelation of an ARMA(p,q) filter applied to a stationary process.

cochran_mq()

Cochran's multivariate Q-test for heterogeneity.

crouse_msd()

Continuous-spectrum approximation to the Rouse-GLE model.

csi_model

Base class for CSI models.

csi_resid()

Calculate the residuals of a CSI process.

csi_sim()

Simulate increments of a CSI process.

downsample()

Downsample a multi-dimensional time series.

drift_linear() drift_none() drift_quadratic()

Predefined drift functions for csi_model objects.

farma_acf()

Calculate the autocorrelation of the fARMA model.

farma_fit()

Fit the fARMA(p,q) model.

farma_model

Constructor for farma model object.

fbm_acf()

Calculate the autocorrelation of the fBM model.

fbm_fit()

Fit the fBM model.

fbm_model

Class definition for the fBM model.

fbm_msd()

Calculate the mean square displacement of the fBM model.

fsd_acf()

Calculate the autocorrelation of the fSD model.

fsd_fit()

Fit the fSD model.

fsd_model

Class definition for the fSD model.

fsd_msd()

Calculate the mean square displacement of the fSD model.

hbe

Simulated HBE dataset.

logit() ilogit()

Generalized logistic and inverse-logistic transformations.

ls_fit() ls_msd_fit()

Calculate the least-squares estimate of (alpha, D).

ma_acf()

Calculate the autocorrelation of an MA(q) filter applied to a stationary process.

msd_fit()

Sample estimate of mean squared displacement.

msd_subdiff()

Calculate effective subdiffusion time window and parameters from an arbitrary mean square displacement curve.

ad_pval() sw_pval() bc_pval()

P-value calculation for various normality tests.

prony_acf()

Autocorrelation of the Prony-GLE increment process.

prony_coeff()

Coefficients of position-process representation of the Prony-GLE.

prony_msd()

MSD of the Prony-GLE model.

rouse_acf()

ACF of the Rouse-GLE model.

rouse_msd()

MSD of the Rouse-GLE model.

rouse_sub()

Subdiffusive timescale of Rouse-GLE model.

subdiff subdiff-package

Inference for Subdiffusive Particle Tracking.

trans_Sigma() itrans_Sigma()

Unconstraining transformation for variance matrices.